PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 271aa    MW: 29487.2 Da    PI: 4.6999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717992genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05244267123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                + C+ C+++F++ + L++H +  H
  676717992 244 FGCKSCNRTFTSEMGLQSHTKAkH 267
                56*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.845244271IPR007087Zinc finger, C2H2
PROSITE patternPS000280246267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRLILGVEVK SGEPLRVDPG EQMIVHISLV ALGEKKGGNE QVRLYMKVGD KKLVIGTLSH  60
DKIPQLSTEI VLERPFELSH SWKDGSVYFS GYKVDASEPA VAKSGVKQVN FQLPNEDDKA  120
NQDDDDTSSD DAEDEEEAKK VTAEVDDSDE DDEEDSSDDD EDDTSDEDTP EKADESNKKR  180
PAEANTSKTP SNKKAKFVTP QKTETKKPHV HVATPHPSKQ GGKNSGSNGE SSKQQQTPKS  240
AGAFGCKSCN RTFTSEMGLQ SHTKAKHSAA A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122675.11e-127PREDICTED: histone deacetylase HDT3
RefseqXP_013668369.11e-127PREDICTED: histone deacetylase HDT3-like
SwissprotQ9LZR51e-105HDT3_ARATH; Histone deacetylase HDT3
TrEMBLV4KQT01e-125V4KQT0_EUTSA; Uncharacterized protein
STRINGBra009513.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-44histone deacetylase 2C